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Paper · 1810.12241 · 2018

Few-shot 3D Multi-modal Medical Image Segmentation using Generative Adversarial Learning

arXiv · PDF · Open in the Atlas

Code that ran

We lifted 6 functions out of this paper's own repositories and ran 1 of them in a sandbox. "Ran" means the function executed on a synthesized input and returned a value. It is not a reproduction of the paper's results.

RepositoryRoleRan
arnab39/FewShot_GAN-Unet3D canonical 1 of 6
FunctionStatusWhere it lives
gaussian_nll Ran arnab39/FewShot_GAN-Unet3D/tensorflow/lib/operations.py
code served (permissive licence) · get_code("96330c807f450c14")
compute_weighted_fm_loss Not yet run arnab39/FewShot_GAN-Unet3D/tensorflow/lib/utils.py
code served (permissive licence) · get_code("7a4e9b0cbf3d8e35")
conv3d Not yet run arnab39/FewShot_GAN-Unet3D/tensorflow/lib/operations.py
code served (permissive licence) · get_code("6024f115cb83d9ca")
deconv3d Not yet run arnab39/FewShot_GAN-Unet3D/tensorflow/lib/operations.py
code served (permissive licence) · get_code("eb6e2b8cd5e1d13b")
load_model Not yet run arnab39/FewShot_GAN-Unet3D/tensorflow/lib/utils.py
code served (permissive licence) · get_code("3e4080fa699e175f")
recompose3D_overlap Not yet run arnab39/FewShot_GAN-Unet3D/tensorflow/lib/utils.py
code served (permissive licence) · get_code("f4da2c52cbf42320")

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Abstract

We address the problem of segmenting 3D multi-modal medical images in scenarios where very few labeled examples are available for training. Leveraging the recent success of adversarial learning for semi-supervised segmentation, we propose a novel method based on Generative Adversarial Networks (GANs) to train a segmentation model with both labeled and unlabeled images. The proposed method prevents over-fitting by learning to discriminate between true and fake patches obtained by a generator network. Our work extends current adversarial learning approaches, which focus on 2D single-modality images, to the more challenging context of 3D volumes of multiple modalities. The proposed method is evaluated on the problem of segmenting brain MRI from the iSEG-2017 and MRBrainS 2013 datasets. Significant performance improvement is reported, compared to state-of-art segmentation networks trained in a fully-supervised manner. In addition, our work presents a comprehensive analysis of different GAN architectures for semi-supervised segmentation, showing recent techniques like feature matching to yield a higher performance than conventional adversarial training approaches. Our code is publicly available at https://github.com/arnab39/FewShot_GAN-Unet3D

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