SYNTOLOGY HomeExplorerAtlasCodeMethodologyAboutDevelopersFeedPricing
Paper · 2202.10847 · 2022

UncertaINR: Uncertainty Quantification of End-to-End Implicit Neural Representations for Computed Tomography

arXiv · PDF · Open in the Atlas

Code that ran

We lifted 9 functions out of this paper's own repositories and ran 9 of them in a sandbox. "Ran" means the function executed on a synthesized input and returned a value. It is not a reproduction of the paper's results.

RepositoryRoleRan
bobby-he/uncertainr canonical 9 of 9
FunctionStatusWhere it lives
MC_dropout Ran bobby-he/uncertainr/modules.py
code served (permissive licence) · get_code("a91dafdf4d09eeb2")
compute_regularization Ran bobby-he/uncertainr/numpyro_port.py
code served (permissive licence) · get_code("fac3c05bd2f08140")
ct_project Ran bobby-he/uncertainr/numpyro_port.py
code served (permissive licence) · get_code("27e9cc16949675e8")
get_mgrid Ran bobby-he/uncertainr/dataio.py
code served (permissive licence) · get_code("c3c376e19f06a842")
image_mse Ran bobby-he/uncertainr/loss_functions.py
code served (permissive licence) · get_code("196981f676d3a9d8")
image_mse_uncertain Ran bobby-he/uncertainr/loss_functions.py
code served (permissive licence) · get_code("7b2f5bc9e0c78615")
lin2img Ran bobby-he/uncertainr/dataio.py
code served (permissive licence) · get_code("9d902c538061fea5")
normal_nll Ran bobby-he/uncertainr/loss_functions.py
code served (permissive licence) · get_code("f67fcc6b7a31ebd4")
uniform_zero_pad_img Ran bobby-he/uncertainr/dataio.py
code served (permissive licence) · get_code("1e13df6f5170b938")

Repositories linked to this paper

Some links come from the archived Papers with Code dataset (CC BY-SA 4.0): attribution and licence.

Abstract

Implicit neural representations (INRs) have achieved impressive results for scene reconstruction and computer graphics, where their performance has primarily been assessed on reconstruction accuracy. As INRs make their way into other domains, where model predictions inform high-stakes decision-making, uncertainty quantification of INR inference is becoming critical. To that end, we study a Bayesian reformulation of INRs, UncertaINR, in the context of computed tomography, and evaluate several Bayesian deep learning implementations in terms of accuracy and calibration. We find that they achieve well-calibrated uncertainty, while retaining accuracy competitive with other classical, INR-based, and CNN-based reconstruction techniques. Contrary to common intuition in the Bayesian deep learning literature, we find that INRs obtain the best calibration with computationally efficient Monte Carlo dropout, outperforming Hamiltonian Monte Carlo and deep ensembles. Moreover, in contrast to the best-performing prior approaches, UncertaINR does not require a large training dataset, but only a handful of validation images.

For agents

The same record, over MCP at https://syntology.ai/mcp:

get_harvested_code_for_paper("2202.10847")
get_code_for_paper("2202.10847")
have("2202.10847")

Connect an agent — have() is free.