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Paper · 2206.11739 · 2022

Evidence fusion with contextual discounting for multi-modality medical image segmentation

arXiv · PDF · Open in the Atlas

Code that ran

We lifted 10 functions out of this paper's own repositories and ran 8 of them in a sandbox. "Ran" means the function executed on a synthesized input and returned a value. It is not a reproduction of the paper's results.

RepositoryRoleRan
iweisskohl/evidence-fusion-with-contextual-discounting canonical 8 of 10
FunctionStatusWhere it lives
count_parameters Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/utils.py
code served (permissive licence) · get_code("f6b944f50d3f15ae")
custom_collate Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/dataset/batch_utils.py
code served (permissive licence) · get_code("6bfcfbaa8bf2d935")
determinist_collate Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/dataset/batch_utils.py
code served (permissive licence) · get_code("72e46dc00281edd0")
get_brats_folder Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/dataset/brats.py
code served (permissive licence) · get_code("38766f7f8ec38aea")
get_left_right_idx_should_pad Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/dataset/image_utils.py
code served (permissive licence) · get_code("2799dc31e1a72ff7")
pad_batch_to_max_shape Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/dataset/batch_utils.py
code served (permissive licence) · get_code("d35c4c84b0f92dd0")
pad_or_crop_image Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/dataset/image_utils.py
code served (permissive licence) · get_code("cb592a4accf965ba")
pad_or_crop_image_seg Ran iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/dataset/image_utils.py
code served (permissive licence) · get_code("0c41f5819ab13417")
master_do Not yet run iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/utils.py
code served (permissive licence) · get_code("3fd75644af4ea49e")
reload_ckpt_bis Not yet run iweisskohl/evidence-fusion-with-contextual-discounting/medical-segmentation-master_enn_fusion/utils.py
code served (permissive licence) · get_code("e59a354e9d506ec1")

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Abstract

As information sources are usually imperfect, it is necessary to take into account their reliability in multi-source information fusion tasks. In this paper, we propose a new deep framework allowing us to merge multi-MR image segmentation results using the formalism of Dempster-Shafer theory while taking into account the reliability of different modalities relative to different classes. The framework is composed of an encoder-decoder feature extraction module, an evidential segmentation module that computes a belief function at each voxel for each modality, and a multi-modality evidence fusion module, which assigns a vector of discount rates to each modality evidence and combines the discounted evidence using Dempster's rule. The whole framework is trained by minimizing a new loss function based on a discounted Dice index to increase segmentation accuracy and reliability. The method was evaluated on the BraTs 2021 database of 1251 patients with brain tumors. Quantitative and qualitative results show that our method outperforms the state of the art, and implements an effective new idea for merging multi-information within deep neural networks.

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