We lifted 11 functions out of this paper's own repositories and ran 7 of them in a sandbox. "Ran" means the function executed on a synthesized input and returned a value. It is not a reproduction of the paper's results.
| Repository | Role | Ran |
|---|---|---|
| ma921/sober | canonical | 7 of 11 |
| Function | Status | Where it lives |
|---|---|---|
| BOLFIKernel | Ran | ma921/sober/SOBER/BOLFI/_gpytorch_bolfi_model.py code served (permissive licence) · get_code("4bb65ecc777ecb0d") |
| batch_tanimoto_sim | Ran | ma921/sober/SOBER/_drug_modelling.py code served (permissive licence) · get_code("4cdb0e915aa66f75") |
| default_postprocess_script | Ran | ma921/sober/SOBER/_drug_modelling.py code served (permissive licence) · get_code("e082c548c0d2fbc7") |
| ker_svd_sparsify | Ran | ma921/sober/SOBER/_rchq.py code served (permissive licence) · get_code("2260270b27417129") |
| set_gp | Ran | ma921/sober/SOBER/_gp.py code served (permissive licence) · get_code("9fddb2a29364a8c1") |
| setting_parameters | Ran | ma921/sober/SOBER/_settings.py code served (permissive licence) · get_code("a7358e02d3c953b1") |
| train_GP_with_Adam | Ran | ma921/sober/SOBER/_gp.py code served (permissive licence) · get_code("a616e1ee7e9a83cd") |
| rc_kernel_svd | Not yet run | ma921/sober/SOBER/_rchq.py code served (permissive licence) · get_code("152fb89bd595cfcb") |
| recombination | Not yet run | ma921/sober/SOBER/_rchq.py code served (permissive licence) · get_code("0dacfdc69ea81b3e") |
| train_GP_with_BFGS | Not yet run | ma921/sober/SOBER/_gp.py code served (permissive licence) · get_code("83ea557ab0cefab9") |
| update_continuous_prior | Not yet run | ma921/sober/SOBER/_prior_update.py code served (permissive licence) · get_code("0313bdccfff80f8c") |
Some links come from the archived Papers with Code dataset (CC BY-SA 4.0): attribution and licence.
Parallelisation in Bayesian optimisation is a common strategy but faces several challenges: the need for flexibility in acquisition functions and kernel choices, flexibility dealing with discrete and continuous variables simultaneously, model misspecification, and lastly fast massive parallelisation. To address these challenges, we introduce a versatile and modular framework for batch Bayesian optimisation via probabilistic lifting with kernel quadrature, called SOBER, which we present as a Python library based on GPyTorch/BoTorch. Our framework offers the following unique benefits: (1) Versatility in downstream tasks under a unified approach. (2) A gradient-free sampler, which does not require the gradient of acquisition functions, offering domain-agnostic sampling (e.g., discrete and mixed variables, non-Euclidean space). (3) Flexibility in domain prior distribution. (4) Adaptive batch size (autonomous determination of the optimal batch size). (5) Robustness against a misspecified reproducing kernel Hilbert space. (6) Natural stopping criterion.
The same record, over MCP at https://syntology.ai/mcp:
get_harvested_code_for_paper("2404.12219")
get_code_for_paper("2404.12219")
have("2404.12219")
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