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Paper · 2405.16357 · 2024

Exploring the Enigma of Neural Dynamics Through A Scattering-Transform Mixer Landscape for Riemannian Manifold

arXiv · PDF · Open in the Atlas

Code that ran

We lifted 14 functions out of this paper's own repositories and ran 11 of them in a sandbox. "Ran" means the function executed on a synthesized input and returned a value. It is not a reproduction of the paper's results.

RepositoryRoleRan
Dandy5721/ICML2024 canonical 11 of 14
FunctionStatusWhere it lives
cosine_similarity Ran Dandy5721/ICML2024/CODE/deepholobrain/losses.py
pointer only (licence: NONE) · get_code("73b94cf94d425dda")
distance_loss Ran Dandy5721/ICML2024/CODE/deepholobrain/losses.py
pointer only (licence: NONE) · get_code("735222ba93143495")
exp Ran Dandy5721/ICML2024/CODE/deepholobrain/layers/riemannian.py
pointer only (licence: NONE) · get_code("de192f477635e5d9")
fc2vector Ran Dandy5721/ICML2024/CODE/deepholobrain/utils.py
pointer only (licence: NONE) · get_code("bb139a088e7c1ff4")
graph_harmonic_wavelets Ran Dandy5721/ICML2024/CODE/preprocessing/compute_harmonic_wavelets.py
pointer only (licence: NONE) · get_code("bde177856367987a")
log Ran Dandy5721/ICML2024/CODE/deepholobrain/layers/riemannian.py
pointer only (licence: NONE) · get_code("8a53b27b1af1ce1c")
orthogonal_projection Ran Dandy5721/ICML2024/CODE/deepholobrain/optim/stiefel_optimizer.py
pointer only (licence: NONE) · get_code("f5e80780a3d6b838")
retraction Ran Dandy5721/ICML2024/CODE/deepholobrain/optim/stiefel_optimizer.py
pointer only (licence: NONE) · get_code("0a3bf866848b6a5f")
safe_eigh Ran Dandy5721/ICML2024/CODE/deepholobrain/layers/riemannian.py
pointer only (licence: NONE) · get_code("c6699abbd63c1e02")
similarity_loss Ran Dandy5721/ICML2024/CODE/deepholobrain/losses.py
pointer only (licence: NONE) · get_code("98ea6f74dd635718")
sorted_aphanumeric Ran Dandy5721/ICML2024/CODE/deepholobrain/utils.py
pointer only (licence: NONE) · get_code("996351591328b420")
deepholobrain_harmonic_wavelet_matrix Not yet run Dandy5721/ICML2024/CODE/deepholobrain/layers/wavelet.py
pointer only (licence: NONE) · get_code("0c92eb12deea8786")
graph_harmonic_basis Not yet run Dandy5721/ICML2024/CODE/deepholobrain/layers/wavelet.py
pointer only (licence: NONE) · get_code("dae4f41b32ec1257")
graph_harmonic_components Not yet run Dandy5721/ICML2024/CODE/deepholobrain/layers/wavelet.py
pointer only (licence: NONE) · get_code("136bbac1f26febc4")

Repositories linked to this paper

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Abstract

The human brain is a complex inter-wired system that emerges spontaneous functional fluctuations. In spite of tremendous success in the experimental neuroscience field, a system-level understanding of how brain anatomy supports various neural activities remains elusive. Capitalizing on the unprecedented amount of neuroimaging data, we present a physics-informed deep model to uncover the coupling mechanism between brain structure and function through the lens of data geometry that is rooted in the widespread wiring topology of connections between distant brain regions. Since deciphering the puzzle of self-organized patterns in functional fluctuations is the gateway to understanding the emergence of cognition and behavior, we devise a geometric deep model to uncover manifold mapping functions that characterize the intrinsic feature representations of evolving functional fluctuations on the Riemannian manifold. In lieu of learning unconstrained mapping functions, we introduce a set of graph-harmonic scattering transforms to impose the brain-wide geometry on top of manifold mapping functions, which allows us to cast the manifold-based deep learning into a reminiscent of MLP-Mixer architecture (in computer vision) for Riemannian manifold. As a proof-of-concept approach, we explore a neural-manifold perspective to understand the relationship between (static) brain structure and (dynamic) function, challenging the prevailing notion in cognitive neuroscience by proposing that neural activities are essentially excited by brain-wide oscillation waves living on the geometry of human connectomes, instead of being confined to focal areas.

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